Retrieves SNP haplotype data
Arguments
- pop
an object of
Pop-class- snpChip
an integer. Indicates which SNP chip's haplotypes to retrieve.
- haplo
either "all" for all haplotypes or an integer for a single set of haplotypes. Use a value of 1 for female haplotypes and a value of 2 for male haplotypes in diploids.
- chr
a vector of chromosomes to retrieve. If NULL, all chromosome are retrieved.
- asRaw
return in raw (byte) format
- simParam
an object of
SimParam
Examples
#Create founder haplotypes
founderPop = quickHaplo(nInd=10, nChr=1, segSites=15)
#Set simulation parameters
SP = SimParam$new(founderPop)
SP$addTraitA(10)
SP$addSnpChip(5)
#Create population
pop = newPop(founderPop, simParam=SP)
pullSnpHaplo(pop, simParam=SP)
#> 1_8 1_9 1_11 1_14 1_15
#> 1_1 1 0 1 1 0
#> 1_2 0 0 0 0 0
#> 2_1 0 1 1 0 0
#> 2_2 0 0 0 1 1
#> 3_1 0 0 1 0 1
#> 3_2 1 1 0 0 0
#> 4_1 1 0 0 1 1
#> 4_2 0 0 0 1 0
#> 5_1 0 0 1 1 1
#> 5_2 0 1 1 0 0
#> 6_1 1 0 0 0 1
#> 6_2 1 0 0 0 1
#> 7_1 1 1 1 0 0
#> 7_2 1 0 0 1 1
#> 8_1 1 1 0 0 1
#> 8_2 0 0 0 0 0
#> 9_1 1 0 0 0 0
#> 9_2 1 0 1 1 1
#> 10_1 1 0 0 0 1
#> 10_2 0 0 0 1 1