Quick founder haplotype simulation

Rapidly simulates founder haplotypes by randomly sampling 0s and 1s. This is equivalent to having all loci with allele frequency 0.5 and being in linkage equilibrium.

Usage

quickHaplo(nInd, nChr, segSites, genLen = 1, ploidy = 2L, inbred = FALSE)

Arguments

nInd

number of individuals to simulate

nChr

number of chromosomes to simulate

segSites

number of segregating sites per chromosome

genLen

genetic length of chromosomes

ploidy

ploidy level of organism

inbred

should founder individuals be inbred

Value

an object of MapPop-class

Examples

# Creates a populations of 10 outbred individuals
# Their genome consists of 1 chromosome and 100 segregating sites
founderPop = quickHaplo(nInd=10,nChr=1,segSites=100)