Creates an initial Pop-class from an object of
MapPop-class or NamedMapPop-class.
The function is intended for use with output from functions such
as runMacs, newMapPop, or
quickHaplo.
Arguments
- rawPop
an object of
MapPop-classorNamedMapPop-class- simParam
an object of
SimParam- ...
additional arguments used internally
Value
Returns an object of Pop-class
Details
Note that newPop takes genomes from the
rawPop and uses them without recombination! Hence, if you
call newPop(rawPop = founderGenomes) twice, you will get
two sets of individuals with different id but the same genomes.
To get genetically different sets of individuals you can subset the
rawPop input, say first half for one set and the second half
for the other set.
Examples
#Create founder haplotypes
founderPop = quickHaplo(nInd=2, nChr=1, segSites=10)
#Set simulation parameters
SP = SimParam$new(founderPop)
SP$addTraitA(10)
#Create population
pop = newPop(founderPop, simParam=SP)
isPop(pop)
#> [1] TRUE
#Misc
pop@misc$tmp1 = rnorm(n=2)
pop@misc$tmp2 = rnorm(n=2)
#MiscPop
pop@miscPop$tmp1 = sum(pop@misc$tmp1)
pop@miscPop$tmp2 = sum(pop@misc$tmp2)