Raw population with genetic map

Extends RawPop-class to add a genetic map. This is the first object created in a simulation. It is used for creating initial populations and setting traits in the SimParam.

Usage

# S4 method for MapPop
[(x, i)

# S4 method for MapPop
c(x, ...)

isMapPop(x)

Arguments

x

a 'MapPop' object

i

index of individuals

...

additional 'MapPop' objects

Methods (by generic)

• [: Extract MapPop by index

• c(MapPop): Combine multiple MapPops

Functions

• isMapPop(): Test if object is of a MapPop class

Slots

genMap

list of chromosome genetic maps

centromere

vector of centromere positions

inbred

indicates whether the individuals are fully inbred